3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05342

Details:

PFam ID : PF05342

PFam Domain Description : M26 IgA1-specific Metallo-endopeptidase N-terminal region

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 76

Average sequence length: 214.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05342	E8KLC3_STRSA_618_872	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05342	E5XFB7_9FIRM_1955_2084	100

Sequence based PCA Plot of the family - PF05342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=162 Length=8
Motif3 Start=197 Length=11
Motif4 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay