3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05337

Details:

PFam ID : PF05337

PFam Domain Description : Macrophage colony stimulating factor-1 (CSF-1)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 21

Average sequence length: 220.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05337	D3YTW1_MOUSE_31_163	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05337	D6QSY1_CAPHI_1_167	100

Sequence based PCA Plot of the family - PF05337 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay