3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05336

Details:

PFam ID : PF05336

PFam Domain Description : Domain of unknown function (DUF718)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 367

Average sequence length: 104.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05336	E2B530_9HYME_34_147	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05336	B7FV54_PHATC_56_184	100

Sequence based PCA Plot of the family - PF05336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=30 Length=8
Motif3 Start=101 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay