3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05321

Details:

PFam ID : PF05321

PFam Domain Description : Haemolysin expression modulating protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 56

Average sequence length: 53.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05321	D1RW02_SEROD_1_19	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05321	D1RW02_SEROD_1_19	98.1

Sequence based PCA Plot of the family - PF05321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay