3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05317

Details:

PFam ID : PF05317

PFam Domain Description : Thermopsin

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 56

Average sequence length: 255.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05317	D9Q159_ACIS3_149_338	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05317	C7DHR3_9EURY_315_613	100

Sequence based PCA Plot of the family - PF05317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=245 Length=8
Motif2 Start=23 Length=8
Motif3 Start=113 Length=8
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay