3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05311

Details:

PFam ID : PF05311

PFam Domain Description : Baculovirus 33KDa late protein (PP31)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 35

Average sequence length: 263.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05311	A5IZQ0_9BBAC_35_284	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05311	B5X026_9ABAC_2_312	100

Sequence based PCA Plot of the family - PF05311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=142 Length=8
Motif3 Start=54 Length=11
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay