3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05308

Details:

PFam ID : PF05308

PFam Domain Description : Mitochondrial fission regulator

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 47

Average sequence length: 195.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05308	E2BEA9_9HYME_2_50	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05308	Q0P4U6_XENTR_52_306	100

Sequence based PCA Plot of the family - PF05308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay