3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05301

Details:

PFam ID : PF05301

PFam Domain Description : Touch receptor neuron protein Mec-17

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 78

Average sequence length: 105.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05301	E9J3H6_SOLIN_1_58	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05301	A9SG65_PHYPA_69_202	100

Sequence based PCA Plot of the family - PF05301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=65 Length=8
Motif3 Start=121 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay