3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05299

Details:

PFam ID : PF05299

PFam Domain Description : M61 glycyl aminopeptidase

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 245

Average sequence length: 118.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05299	B4UCZ3_ANASK_288_408	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05299	Q9A5B1_CAUCR_289_411	100

Sequence based PCA Plot of the family - PF05299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=20
Motif2 Start=16 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay