3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05297

Details:

PFam ID : PF05297

PFam Domain Description : Herpesvirus latent membrane protein 1 (LMP1)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 45

Average sequence length: 125.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05297	Q9QAN9_EBVG_51_81	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05297	Q81932_CHV12_1_218	100

Sequence based PCA Plot of the family - PF05297 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=18
Motif2 Start=13 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay