3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05296

Details:

PFam ID : PF05296

PFam Domain Description : Mammalian taste receptor protein (TAS2R)

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 386

Average sequence length: 279.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05296	A5H1X1_DEVMA_3_260	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05296	Q2ABB5_BOVIN_1_178	100

Sequence based PCA Plot of the family - PF05296 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=104 Length=8
Motif3 Start=17 Length=8
Motif4 Start=202 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay