3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05292

Details:

PFam ID : PF05292

PFam Domain Description : Malonyl-CoA decarboxylase (MCD)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 245

Average sequence length: 250.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05292	A4ENJ0_9RHOB_1_105	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05292	B8BF39_ORYSI_28_315	97.5

Sequence based PCA Plot of the family - PF05292 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=115 Length=8
Motif2 Start=44 Length=8
Motif3 Start=69 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay