3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05290

Details:

PFam ID : PF05290

PFam Domain Description : Baculovirus immediate-early protein (IE-0)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 27

Average sequence length: 131.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05290	Q0ILB1_NPVLS_143_285	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05290	Q0ILB1_NPVLS_143_285	100

Sequence based PCA Plot of the family - PF05290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=17 Length=8
Motif3 Start=123 Length=8
Motif4 Start=97 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay