3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05283

Details:

PFam ID : PF05283

PFam Domain Description : Multi-glycosylated core protein 24 (MGC-24)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 45

Average sequence length: 105.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05283	E9PGX8_HUMAN_4_145	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05283	E4WQZ6_OIKDI_10_108	95.4

Sequence based PCA Plot of the family - PF05283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=18
Motif2 Start=9 Length=8
Motif3 Start=52 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay