3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05281

Details:

PFam ID : PF05281

PFam Domain Description : Neuroendocrine protein 7B2 precursor (Secretogranin V)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 44

Average sequence length: 201.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05281	B4QWV3_DROSI_37_231	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05281	P91757_LYMST_23_262	100

Sequence based PCA Plot of the family - PF05281 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=240 Length=8
Motif2 Start=168 Length=8
Motif3 Start=231 Length=8
Motif4 Start=122 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay