3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05280

Details:

PFam ID : PF05280

PFam Domain Description : Flagellar transcriptional activator (FlhD)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 108

Average sequence length: 169.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05280	C4SBM3_YERMO_1_120	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05280	C1MEH2_9ENTR_1_173	100

Sequence based PCA Plot of the family - PF05280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay