3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05275

Details:

PFam ID : PF05275

PFam Domain Description : Copper resistance protein B precursor (CopB)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 181

Average sequence length: 207.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05275	D5BJ67_ZUNPS_526_707	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05275	F2G5I8_ALTMD_32_248	100

Sequence based PCA Plot of the family - PF05275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=114 Length=8
Motif3 Start=54 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay