3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05274

Details:

PFam ID : PF05274

PFam Domain Description : Occlusion-derived virus envelope protein E25

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 33

Average sequence length: 177.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05274	Q6VFT0_9POXV_1_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05274	C3VNY7_9ABAC_35_225	100

Sequence based PCA Plot of the family - PF05274 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=60 Length=8
Motif3 Start=100 Length=8
Motif4 Start=170 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay