3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05272

Details:

PFam ID : PF05272

PFam Domain Description : Virulence-associated protein E

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 366

Average sequence length: 188.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05272	C6WE63_ACTMD_370_457	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05272	D0W6V0_NEILA_356_571	100

Sequence based PCA Plot of the family - PF05272 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=190 Length=8
Motif3 Start=160 Length=8
Motif4 Start=58 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay