3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05271

Details:

PFam ID : PF05271

PFam Domain Description : Tobravirus 2B protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 7

Average sequence length: 100.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05271	C6WE63_ACTMD_370_457	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05271	E6Y0K8_9VIRU_2_118	100

Sequence based PCA Plot of the family - PF05271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay