3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05270

Details:

PFam ID : PF05270

PFam Domain Description : Alpha-L-arabinofuranosidase B (ABFB)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 153

Average sequence length: 130.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05270	C6WE63_ACTMD_370_457	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05270	A9WSY9_RENSM_71_216	100

Sequence based PCA Plot of the family - PF05270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=79 Length=8
Motif3 Start=56 Length=8
Motif4 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay