3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05269

Details:

PFam ID : PF05269

PFam Domain Description : Bacteriophage CII protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 47

Average sequence length: 83.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05269	C4GFS3_9NEIS_1_91	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05269	E5AGE8_9CAUD_1_92	95.6

Sequence based PCA Plot of the family - PF05269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay