3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05259

Details:

PFam ID : PF05259

PFam Domain Description : Herpesvirus glycoprotein L

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 20

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05259	GL_PSHV1_58_148	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05259	C6ZD36_9ALPH_67_169	100

Sequence based PCA Plot of the family - PF05259 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay