3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05257

Details:

PFam ID : PF05257

PFam Domain Description : CHAP domain

Number of Sequence in 50% Dataset : 170

Number of Sequence in Full Dataset : 811

Average sequence length: 121.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05257	Q3DR14_STRAG_1_83	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05257	E4L1T0_9STRE_2_75	99.7

Sequence based PCA Plot of the family - PF05257 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=97 Length=17
Motif3 Start=25 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay