3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05256

Details:

PFam ID : PF05256

PFam Domain Description : Uncharacterised protein family (UPF0223)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 112

Average sequence length: 86.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05256	D2W395_NAEGR_253_339	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05256	C2D219_LACBR_3_92	100

Sequence based PCA Plot of the family - PF05256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=24 Length=8
Motif3 Start=45 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay