3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05255

Details:

PFam ID : PF05255

PFam Domain Description : Uncharacterised protein family (UPF0220)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 134

Average sequence length: 147.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05255	B7Z5M7_HUMAN_1_96	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05255	A8Q894_MALGO_6_199	100

Sequence based PCA Plot of the family - PF05255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=36 Length=8
Motif3 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay