3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05254

Details:

PFam ID : PF05254

PFam Domain Description : Uncharacterised protein family (UPF0203)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 102

Average sequence length: 68.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05254	B7G1C7_PHATC_55_121	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05254	E3KKW2_PUCGT_1_84	100

Sequence based PCA Plot of the family - PF05254 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay