3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05253

Details:

PFam ID : PF05253

PFam Domain Description : U11-48K-like CHHC zinc finger

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 269

Average sequence length: 26.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05253	B5E079_DROPS_32_51	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05253	E0VCZ5_PEDHC_57_82	100

Sequence based PCA Plot of the family - PF05253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay