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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05250
Details:

PFam ID : PF05250

PFam Domain Description : Uncharacterised protein family (UPF0193)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 46

Average sequence length: 170.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05250C3ZU98_BRAFL_111_16880
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05250D3TRF9_GLOMM_26_238100
Sequence based PCA Plot of the family - PF05250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=91 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay