3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05247

Details:

PFam ID : PF05247

PFam Domain Description : Flagellar protein FlhE

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 90

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05247	C1DHM2_AZOVD_1_103	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05247	C1DHM2_AZOVD_1_103	100

Sequence based PCA Plot of the family - PF05247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay