3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05242

Details:

PFam ID : PF05242

PFam Domain Description : Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05242	D2I6E5_AILME_1_125	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05242	GLCM1_BOVIN_19_153	100

Sequence based PCA Plot of the family - PF05242 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay