3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05241

Details:

PFam ID : PF05241

PFam Domain Description : Emopamil binding protein

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 176

Average sequence length: 179.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05241	D2I6E5_AILME_1_125	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05241	F0XJS7_9PEZI_70_265	100

Sequence based PCA Plot of the family - PF05241 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=96 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay