3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05238

Details:

PFam ID : PF05238

PFam Domain Description : Kinetochore protein CHL4 like

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 77

Average sequence length: 395.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05238	A7F028_SCLS1_19_504	78.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05238	Q6DHP4_DANRE_3_332	100

Sequence based PCA Plot of the family - PF05238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=97 Length=8
Motif3 Start=403 Length=11
Motif4 Start=424 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay