3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05237

Details:

PFam ID : PF05237

PFam Domain Description : MoeZ/MoeB domain

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 1333

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05237	B6ADZ2_CRYMR_214_317	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05237	B6ADZ2_CRYMR_214_317	100

Sequence based PCA Plot of the family - PF05237 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=2 Length=20
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay