3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05236

Details:

PFam ID : PF05236

PFam Domain Description : Transcription initiation factor TFIID component TAF4 family

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 160

Average sequence length: 232.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05236	Q9SFY7_ARATH_452_691	20.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05236	C4V954_NOSCE_62_292	99.3

Sequence based PCA Plot of the family - PF05236 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=208 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay