3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05235

Details:

PFam ID : PF05235

PFam Domain Description : CHAD domain

Number of Sequence in 50% Dataset : 278

Number of Sequence in Full Dataset : 544

Average sequence length: 229.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05235	A4WQZ6_RHOS5_5_71	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05235	B5GP76_STRCL_60_174	99.4

Sequence based PCA Plot of the family - PF05235 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=28
Motif2 Start=107 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay