3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05232

Details:

PFam ID : PF05232

PFam Domain Description : Bacterial Transmembrane Pair family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 460

Average sequence length: 67.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05232	A4WQZ6_RHOS5_5_71	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05232	C6BS32_DESAD_6_73	100

Sequence based PCA Plot of the family - PF05232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay