3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05231

Details:

PFam ID : PF05231

PFam Domain Description : MASE1

Number of Sequence in 50% Dataset : 258

Number of Sequence in Full Dataset : 458

Average sequence length: 264.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05231	E3Y112_SHIFL_1_97	99.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05231	C5T6Q3_ACIDE_5_183	96.0

Sequence based PCA Plot of the family - PF05231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=281 Length=8
Motif2 Start=46 Length=11
Motif3 Start=255 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay