3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05230

Details:

PFam ID : PF05230

PFam Domain Description : MASE2 domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 85

Average sequence length: 87.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05230	C4SXK1_YERIN_1_58	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05230	B4WYT3_9GAMM_22_115	100

Sequence based PCA Plot of the family - PF05230 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay