3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05228

Details:

PFam ID : PF05228

PFam Domain Description : CHASE4 domain

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 286

Average sequence length: 160.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05228	B8E392_DICTD_13_85	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05228	Q2G9C2_NOVAD_63_250	100

Sequence based PCA Plot of the family - PF05228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8
Motif3 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay