3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05227

Details:

PFam ID : PF05227

PFam Domain Description : CHASE3 domain

Number of Sequence in 50% Dataset : 367

Number of Sequence in Full Dataset : 594

Average sequence length: 135.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05227	C8PT98_9SPIO_427_546	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05227	C7QXH8_CYAP0_23_177	100

Sequence based PCA Plot of the family - PF05227 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=37 Length=8
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay