3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05226

Details:

PFam ID : PF05226

PFam Domain Description : CHASE2 domain

Number of Sequence in 50% Dataset : 375

Number of Sequence in Full Dataset : 592

Average sequence length: 318.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05226	C8PT98_9SPIO_427_546	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05226	D8G7U6_9CYAN_395_777	100

Sequence based PCA Plot of the family - PF05226 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=343 Length=8
Motif2 Start=56 Length=8
Motif3 Start=43 Length=8
Motif4 Start=369 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay