3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05225

Details:

PFam ID : PF05225

PFam Domain Description : helix-turn-helix, Psq domain

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 375

Average sequence length: 43.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05225	Y9218_DICDI_151_303	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05225	C3ZZK1_BRAFL_12_56	100

Sequence based PCA Plot of the family - PF05225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay