3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05224

Details:

PFam ID : PF05224

PFam Domain Description : NDT80 / PhoG like DNA-binding family

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 146

Average sequence length: 171.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05224	Y9218_DICDI_151_303	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05224	E4ZIA1_LEPMC_266_467	99.3

Sequence based PCA Plot of the family - PF05224 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=157 Length=8
Motif2 Start=134 Length=8
Motif3 Start=186 Length=14
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay