3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05223

Details:

PFam ID : PF05223

PFam Domain Description : NTF2-like N-terminal transpeptidase domain

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 230

Average sequence length: 111.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05223	E4NFX0_KITSK_52_191	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05223	A5Z8E2_9FIRM_40_157	100

Sequence based PCA Plot of the family - PF05223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=14
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay