3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05222

Details:

PFam ID : PF05222

PFam Domain Description : Alanine dehydrogenase/PNT, N-terminal domain

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 1507

Average sequence length: 132.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05222	D3HMG3_LEGLN_6_152	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05222	B8BS40_THAPS_2_146	100

Sequence based PCA Plot of the family - PF05222 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=109 Length=8
Motif2 Start=1 Length=8
Motif3 Start=67 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay