3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05216

Details:

PFam ID : PF05216

PFam Domain Description : UNC-50 family

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 121

Average sequence length: 212.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05216	A2QY13_ASPNC_1_128	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05216	E9B6S1_LEIME_13_253	100

Sequence based PCA Plot of the family - PF05216 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=144 Length=8
Motif2 Start=17 Length=8
Motif3 Start=197 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay