3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05213

Details:

PFam ID : PF05213

PFam Domain Description : Coronavirus NS2A protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 13

Average sequence length: 180.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05213	Q0Q7P6_ROTHU_71_190	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05213	Q5ICX4_9BETC_6_257	100

Sequence based PCA Plot of the family - PF05213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay