3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05208

Details:

PFam ID : PF05208

PFam Domain Description : ALG3 protein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 159

Average sequence length: 311.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05208	C1GUX0_PARBA_296_378	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05208	Q6C774_YARLI_25_439	100

Sequence based PCA Plot of the family - PF05208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=321 Length=8
Motif2 Start=285 Length=11
Motif3 Start=13 Length=14
Motif4 Start=189 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay