3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05207

Details:

PFam ID : PF05207

PFam Domain Description : CSL zinc finger

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 235

Average sequence length: 58.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05207	D0A566_TRYB9_92_163	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05207	F0VHD0_NEOCA_195_295	100

Sequence based PCA Plot of the family - PF05207 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=44 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay